PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G308200.1.p
Common NamePRUPE_ppa016459mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 224aa    MW: 25418.3 Da    PI: 9.3289
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G308200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.2e-33144202159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+
  Prupe.3G308200.1.p 144 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGIVVTTYEGMHTHP 202
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-34129202IPR003657WRKY domain
SuperFamilySSF1182908.11E-30136203IPR003657WRKY domain
PROSITE profilePS5081129.872139204IPR003657WRKY domain
SMARTSM007742.7E-39144203IPR003657WRKY domain
PfamPF031069.9E-27145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEKYQMFFPC SSSTSSANYD PMIPISATNN ITTDGHHMGM GSSQVYNYFD GRDQSSNGLL  60
GLRSSAGNHV GREVLINKDH HQYLQQQYSD LTTTASANIN INNVIVGADQ NPHEATNSGN  120
KNKGEKKTRK PKYAFQTRSQ VDILDDGYRW RKYGQKAVKN NKFPRSYYRC TYQGCNVKKQ  180
VQRLTKDEGI VVTTYEGMHT HPIEKPSDNF EHILNQMQIY TPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27134203776Probable WRKY transcription factor 4
2lex_A4e-27134203776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216937.11e-170hypothetical protein PRUPE_ppa016459mg
TrEMBLM5WY441e-170M5WY44_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s33560.11e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-57WRKY DNA-binding protein 75